PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc006695.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 370aa    MW: 41972.8 Da    PI: 9.9557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc006695.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.13.3e-091772148
                     FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........t 48
                             +fY++YA +vGF++r s+  ks +++ i ++   Cs+eg+++ + ++         +
  Itr_sc006695.1_g00002.1 17 SFYKNYAAKVGFDIRSSSIMKS-NDDVILTKYILCSREGYKNVTGSStlnvdgassS 72
                             5*****************9999.7777999999*******99888776666665551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-61771IPR004330FAR1 DNA binding domain
PfamPF105513.9E-29117208IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGANLGMTFI TLEAAISFYK NYAAKVGFDI RSSSIMKSND DVILTKYILC SREGYKNVTG  60
SSTLNVDGAS SSSITKRRRV SNKKGATDVD FKNFNRDIRA YIIDPISRKN FGCFGDVVSF  120
DATYQTNRYD MVFTPFTGID NHKKSITFAT GLLTKKDIAS YVWLFEHFKK AMGAEPKVIV  180
TNQDPAMRQA IPAVFNEARH RFCMWHIMCK VGEKVGSVLT YFKDVPMAGL LRTTSRSEGE  240
NATLLWFFKD LNFDKIPLKY VLNRWTKDAS LKPIFHIDGL TFDQGPRMEE RKVLLAQLWG  300
DMQCCIGLAE EAKMDKLIEF AQVIKKKKLI LMTEQTDLSP THRKNAMIES YCVSSKPSEI  360
SILPPRKAKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579KRRRV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1268424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-29FAR1-related sequence 5